Install miniconda within rstudio
曲政
/ 2020-05-23
plot(cars)
x = "Hello world"
print(x + "!")
## Hello world!
No non-system installation of Python could be found.
Would you like to download and install Miniconda?
Miniconda is an open source environment management system for Python.
See https://docs.conda.io/en/latest/miniconda.html for more details.
Would you like to install Miniconda? [Y/n]: y
* Downloading 'https://repo.anaconda.com/miniconda/Miniconda3-latest-MacOSX-x86_64.sh' ...
trying URL 'https://repo.anaconda.com/miniconda/Miniconda3-latest-MacOSX-x86_64.sh'
Content type 'application/x-sh' length 52755183 bytes (50.3 MB)
==================================================
downloaded 50.3 MB
* Installing Miniconda -- please wait a moment ...
PREFIX=/Users/johnqu/Library/r-miniconda
Unpacking payload ...
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /Users/johnqu/Library/r-miniconda
added / updated specs:
- asn1crypto==1.3.0=py37_0
- ca-certificates==2020.1.1=0
- certifi==2019.11.28=py37_0
- cffi==1.14.0=py37hb5b8e2f_0
- chardet==3.0.4=py37_1003
- conda-package-handling==1.6.0=py37h1de35cc_0
- conda==4.8.2=py37_0
- cryptography==2.8=py37ha12b0ac_0
- idna==2.8=py37_0
- libcxx==4.0.1=hcfea43d_1
- libcxxabi==4.0.1=hcfea43d_1
- libedit==3.1.20181209=hb402a30_0
- libffi==3.2.1=h475c297_4
- ncurses==6.2=h0a44026_0
- openssl==1.1.1d=h1de35cc_4
- pip==20.0.2=py37_1
- pycosat==0.6.3=py37h1de35cc_0
- pycparser==2.19=py37_0
- pyopenssl==19.1.0=py37_0
- pysocks==1.7.1=py37_0
- python.app==2=py37_10
- python==3.7.6=h359304d_2
- readline==7.0=h1de35cc_5
- requests==2.22.0=py37_1
- ruamel_yaml==0.15.87=py37h1de35cc_0
- setuptools==45.2.0=py37_0
- six==1.14.0=py37_0
- sqlite==3.31.1=ha441bb4_0
- tk==8.6.8=ha441bb4_0
- tqdm==4.42.1=py_0
- urllib3==1.25.8=py37_0
- wheel==0.34.2=py37_0
- xz==5.2.4=h1de35cc_4
- yaml==0.1.7=hc338f04_2
- zlib==1.2.11=h1de35cc_3
The following NEW packages will be INSTALLED:
asn1crypto pkgs/main/osx-64::asn1crypto-1.3.0-py37_0
ca-certificates pkgs/main/osx-64::ca-certificates-2020.1.1-0
certifi pkgs/main/osx-64::certifi-2019.11.28-py37_0
cffi pkgs/main/osx-64::cffi-1.14.0-py37hb5b8e2f_0
chardet pkgs/main/osx-64::chardet-3.0.4-py37_1003
conda pkgs/main/osx-64::conda-4.8.2-py37_0
conda-package-han~ pkgs/main/osx-64::conda-package-handling-1.6.0-py37h1de35cc_0
cryptography pkgs/main/osx-64::cryptography-2.8-py37ha12b0ac_0
idna pkgs/main/osx-64::idna-2.8-py37_0
libcxx pkgs/main/osx-64::libcxx-4.0.1-hcfea43d_1
libcxxabi pkgs/main/osx-64::libcxxabi-4.0.1-hcfea43d_1
libedit pkgs/main/osx-64::libedit-3.1.20181209-hb402a30_0
libffi pkgs/main/osx-64::libffi-3.2.1-h475c297_4
ncurses pkgs/main/osx-64::ncurses-6.2-h0a44026_0
openssl pkgs/main/osx-64::openssl-1.1.1d-h1de35cc_4
pip pkgs/main/osx-64::pip-20.0.2-py37_1
pycosat pkgs/main/osx-64::pycosat-0.6.3-py37h1de35cc_0
pycparser pkgs/main/osx-64::pycparser-2.19-py37_0
pyopenssl pkgs/main/osx-64::pyopenssl-19.1.0-py37_0
pysocks pkgs/main/osx-64::pysocks-1.7.1-py37_0
python pkgs/main/osx-64::python-3.7.6-h359304d_2
python.app pkgs/main/osx-64::python.app-2-py37_10
readline pkgs/main/osx-64::readline-7.0-h1de35cc_5
requests pkgs/main/osx-64::requests-2.22.0-py37_1
ruamel_yaml pkgs/main/osx-64::ruamel_yaml-0.15.87-py37h1de35cc_0
setuptools pkgs/main/osx-64::setuptools-45.2.0-py37_0
six pkgs/main/osx-64::six-1.14.0-py37_0
sqlite pkgs/main/osx-64::sqlite-3.31.1-ha441bb4_0
tk pkgs/main/osx-64::tk-8.6.8-ha441bb4_0
tqdm pkgs/main/noarch::tqdm-4.42.1-py_0
urllib3 pkgs/main/osx-64::urllib3-1.25.8-py37_0
wheel pkgs/main/osx-64::wheel-0.34.2-py37_0
xz pkgs/main/osx-64::xz-5.2.4-h1de35cc_4
yaml pkgs/main/osx-64::yaml-0.1.7-hc338f04_2
zlib pkgs/main/osx-64::zlib-1.2.11-h1de35cc_3
Preparing transaction: ...working... done
Executing transaction: ...working... done
installation finished.
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /Users/johnqu/Library/r-miniconda
added / updated specs:
- conda
The following packages will be downloaded:
package | build
---------------------------|-----------------
certifi-2020.4.5.1 | py37_0 155 KB
conda-4.8.3 | py37_0 2.8 MB
conda-package-handling-1.6.1| py37h1de35cc_0 1.3 MB
cryptography-2.9.2 | py37ha12b0ac_0 547 KB
idna-2.9 | py_1 49 KB
libcxx-10.0.0 | 1 760 KB
libffi-3.2.1 | h0a44026_6 39 KB
ncurses-6.2 | h0a44026_1 749 KB
openssl-1.1.1g | h1de35cc_0 2.2 MB
pip-20.0.2 | py37_3 1.7 MB
pycparser-2.20 | py_0 92 KB
requests-2.23.0 | py37_0 92 KB
setuptools-46.4.0 | py37_0 522 KB
sqlite-3.31.1 | h5c1f38d_1 1.3 MB
tqdm-4.46.0 | py_0 60 KB
xz-5.2.5 | h1de35cc_0 240 KB
------------------------------------------------------------
Total: 12.5 MB
The following packages will be REMOVED:
asn1crypto-1.3.0-py37_0
libcxxabi-4.0.1-hcfea43d_1
The following packages will be UPDATED:
certifi 2019.11.28-py37_0 --> 2020.4.5.1-py37_0
conda 4.8.2-py37_0 --> 4.8.3-py37_0
conda-package-han~ 1.6.0-py37h1de35cc_0 --> 1.6.1-py37h1de35cc_0
cryptography 2.8-py37ha12b0ac_0 --> 2.9.2-py37ha12b0ac_0
idna pkgs/main/osx-64::idna-2.8-py37_0 --> pkgs/main/noarch::idna-2.9-py_1
libcxx 4.0.1-hcfea43d_1 --> 10.0.0-1
libffi 3.2.1-h475c297_4 --> 3.2.1-h0a44026_6
ncurses 6.2-h0a44026_0 --> 6.2-h0a44026_1
openssl 1.1.1d-h1de35cc_4 --> 1.1.1g-h1de35cc_0
pip 20.0.2-py37_1 --> 20.0.2-py37_3
pycparser pkgs/main/osx-64::pycparser-2.19-py37~ --> pkgs/main/noarch::pycparser-2.20-py_0
requests 2.22.0-py37_1 --> 2.23.0-py37_0
setuptools 45.2.0-py37_0 --> 46.4.0-py37_0
sqlite 3.31.1-ha441bb4_0 --> 3.31.1-h5c1f38d_1
tqdm 4.42.1-py_0 --> 4.46.0-py_0
xz 5.2.4-h1de35cc_4 --> 5.2.5-h1de35cc_0
Downloading and Extracting Packages
setuptools-46.4.0 | 522 KB | ########## | 100%
conda-package-handli | 1.3 MB | ########## | 100%
pycparser-2.20 | 92 KB | ########## | 100%
pip-20.0.2 | 1.7 MB | ########## | 100%
openssl-1.1.1g | 2.2 MB | ########## | 100%
xz-5.2.5 | 240 KB | ########## | 100%
idna-2.9 | 49 KB | ########## | 100%
sqlite-3.31.1 | 1.3 MB | ########## | 100%
certifi-2020.4.5.1 | 155 KB | ########## | 100%
ncurses-6.2 | 749 KB | ########## | 100%
libcxx-10.0.0 | 760 KB | ########## | 100%
tqdm-4.46.0 | 60 KB | ########## | 100%
requests-2.23.0 | 92 KB | ########## | 100%
cryptography-2.9.2 | 547 KB | ########## | 100%
conda-4.8.3 | 2.8 MB | ########## | 100%
libffi-3.2.1 | 39 KB | ########## | 100%
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /Users/johnqu/Library/r-miniconda/envs/r-reticulate
added / updated specs:
- numpy
- python=3.6
The following packages will be downloaded:
package | build
---------------------------|-----------------
blas-1.0 | mkl 6 KB
certifi-2020.4.5.1 | py36_0 155 KB
intel-openmp-2019.4 | 233 887 KB
libffi-3.3 | h0a44026_1 45 KB
libgfortran-3.0.1 | h93005f0_2 426 KB
mkl-2019.4 | 233 101.9 MB
mkl-service-2.3.0 | py36hfbe908c_0 202 KB
mkl_fft-1.0.15 | py36h5e564d8_0 139 KB
mkl_random-1.1.0 | py36ha771720_0 287 KB
numpy-1.18.1 | py36h7241aed_0 5 KB
numpy-base-1.18.1 | py36h3304bdc_1 4.0 MB
pip-20.0.2 | py36_3 1.7 MB
python-3.6.10 | hf48f09d_2 17.1 MB
readline-8.0 | h1de35cc_0 326 KB
setuptools-46.4.0 | py36_0 513 KB
six-1.14.0 | py36_0 26 KB
wheel-0.34.2 | py36_0 50 KB
------------------------------------------------------------
Total: 127.7 MB
The following NEW packages will be INSTALLED:
blas pkgs/main/osx-64::blas-1.0-mkl
ca-certificates pkgs/main/osx-64::ca-certificates-2020.1.1-0
certifi pkgs/main/osx-64::certifi-2020.4.5.1-py36_0
intel-openmp pkgs/main/osx-64::intel-openmp-2019.4-233
libcxx pkgs/main/osx-64::libcxx-10.0.0-1
libedit pkgs/main/osx-64::libedit-3.1.20181209-hb402a30_0
libffi pkgs/main/osx-64::libffi-3.3-h0a44026_1
libgfortran pkgs/main/osx-64::libgfortran-3.0.1-h93005f0_2
mkl pkgs/main/osx-64::mkl-2019.4-233
mkl-service pkgs/main/osx-64::mkl-service-2.3.0-py36hfbe908c_0
mkl_fft pkgs/main/osx-64::mkl_fft-1.0.15-py36h5e564d8_0
mkl_random pkgs/main/osx-64::mkl_random-1.1.0-py36ha771720_0
ncurses pkgs/main/osx-64::ncurses-6.2-h0a44026_1
numpy pkgs/main/osx-64::numpy-1.18.1-py36h7241aed_0
numpy-base pkgs/main/osx-64::numpy-base-1.18.1-py36h3304bdc_1
openssl pkgs/main/osx-64::openssl-1.1.1g-h1de35cc_0
pip pkgs/main/osx-64::pip-20.0.2-py36_3
python pkgs/main/osx-64::python-3.6.10-hf48f09d_2
readline pkgs/main/osx-64::readline-8.0-h1de35cc_0
setuptools pkgs/main/osx-64::setuptools-46.4.0-py36_0
six pkgs/main/osx-64::six-1.14.0-py36_0
sqlite pkgs/main/osx-64::sqlite-3.31.1-h5c1f38d_1
tk pkgs/main/osx-64::tk-8.6.8-ha441bb4_0
wheel pkgs/main/osx-64::wheel-0.34.2-py36_0
xz pkgs/main/osx-64::xz-5.2.5-h1de35cc_0
zlib pkgs/main/osx-64::zlib-1.2.11-h1de35cc_3
Downloading and Extracting Packages
mkl-2019.4 | 101.9 MB | #######6 | 77%
libgfortran-3.0.1 | 426 KB | ########## | 100%
libffi-3.3 | 45 KB | ########## | 100%
python-3.6.10 | 17.1 MB | ########## | 100%
wheel-0.34.2 | 50 KB | ########## | 100%
mkl_fft-1.0.15 | 139 KB | ########## | 100%
mkl-service-2.3.0 | 202 KB | ########## | 100%
blas-1.0 | 6 KB | ########## | 100%
numpy-1.18.1 | 5 KB | ########## | 100%
numpy-base-1.18.1 | 4.0 MB | ########## | 100%
pip-20.0.2 | 1.7 MB | ########## | 100%
readline-8.0 | 326 KB | ########## | 100%
setuptools-46.4.0 | 513 KB | ########## | 100%
six-1.14.0 | 26 KB | ########## | 100%
intel-openmp-2019.4 | 887 KB | ########## | 100%
certifi-2020.4.5.1 | 155 KB | ########## | 100%
mkl_random-1.1.0 | 287 KB | ########## | 100%
CondaHTTPError: HTTP 000 CONNECTION FAILED for url <https://repo.anaconda.com/pkgs/main/osx-64/mkl-2019.4-233.conda>
Elapsed: -
An HTTP error occurred when trying to retrieve this URL.
HTTP errors are often intermittent, and a simple retry will get you on your way.
Error: Error 1 occurred creating conda environment r-reticulate
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /Users/johnqu/Library/r-miniconda/envs/r-reticulate
added / updated specs:
- numpy
- python=3.6
The following packages will be downloaded:
package | build
---------------------------|-----------------
mkl-2019.4 | 233 101.9 MB
------------------------------------------------------------
Total: 101.9 MB
The following NEW packages will be INSTALLED:
blas pkgs/main/osx-64::blas-1.0-mkl
ca-certificates pkgs/main/osx-64::ca-certificates-2020.1.1-0
certifi pkgs/main/osx-64::certifi-2020.4.5.1-py36_0
intel-openmp pkgs/main/osx-64::intel-openmp-2019.4-233
libcxx pkgs/main/osx-64::libcxx-10.0.0-1
libedit pkgs/main/osx-64::libedit-3.1.20181209-hb402a30_0
libffi pkgs/main/osx-64::libffi-3.3-h0a44026_1
libgfortran pkgs/main/osx-64::libgfortran-3.0.1-h93005f0_2
mkl pkgs/main/osx-64::mkl-2019.4-233
mkl-service pkgs/main/osx-64::mkl-service-2.3.0-py36hfbe908c_0
mkl_fft pkgs/main/osx-64::mkl_fft-1.0.15-py36h5e564d8_0
mkl_random pkgs/main/osx-64::mkl_random-1.1.0-py36ha771720_0
ncurses pkgs/main/osx-64::ncurses-6.2-h0a44026_1
numpy pkgs/main/osx-64::numpy-1.18.1-py36h7241aed_0
numpy-base pkgs/main/osx-64::numpy-base-1.18.1-py36h3304bdc_1
openssl pkgs/main/osx-64::openssl-1.1.1g-h1de35cc_0
pip pkgs/main/osx-64::pip-20.0.2-py36_3
python pkgs/main/osx-64::python-3.6.10-hf48f09d_2
readline pkgs/main/osx-64::readline-8.0-h1de35cc_0
setuptools pkgs/main/osx-64::setuptools-46.4.0-py36_0
six pkgs/main/osx-64::six-1.14.0-py36_0
sqlite pkgs/main/osx-64::sqlite-3.31.1-h5c1f38d_1
tk pkgs/main/osx-64::tk-8.6.8-ha441bb4_0
wheel pkgs/main/osx-64::wheel-0.34.2-py36_0
xz pkgs/main/osx-64::xz-5.2.5-h1de35cc_0
zlib pkgs/main/osx-64::zlib-1.2.11-h1de35cc_3
Downloading and Extracting Packages
mkl-2019.4 | 101.9 MB | ########## | 100%
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
#
# To activate this environment, use
#
# $ conda activate /Users/johnqu/Library/r-miniconda/envs/r-reticulate
#
# To deactivate an active environment, use
#
# $ conda deactivate